diff --git a/vrc_torch.ipynb b/vrc_torch.ipynb new file mode 100644 index 0000000..c3100ad --- /dev/null +++ b/vrc_torch.ipynb @@ -0,0 +1,144 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "source": [ + "Here, I'm implementing a vveriable rate coding of human respose time using PyTorch." + ], + "metadata": {} + }, + { + "cell_type": "code", + "execution_count": 68, + "source": [ + "import torch\n", + "from torch import nn\n", + "\n", + "import numpy as np\n", + "from scipy import stats\n", + "import pandas as pd\n", + "\n", + "import matplotlib.pyplot as plt\n", + "import seaborn as sns; sns.set()" + ], + "outputs": [], + "metadata": {} + }, + { + "cell_type": "code", + "execution_count": 171, + "source": [ + "# produce a tarin of spikes and store timestamps of each spike in `spike_timestamps`.\n", + "\n", + "rate = 2\n", + "duration_in_sec = 10.\n", + "\n", + "n_spikes = np.random.poisson(rate * duration_in_sec)\n", + "spike_timestamps = stats.uniform.rvs(loc=0, scale=duration_in_sec, size=n_spikes)\n", + "spike_timestamps = np.sort(spike_timestamps)\n", + "spike_timestamps = spike_timestamps[spike_timestamps\u001b[0m in \u001b[0;36m\u001b[0;34m\u001b[0m\n\u001b[1;32m 12\u001b[0m \u001b[0mx\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;34m...\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 13\u001b[0m \u001b[0my_true\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;34m...\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 14\u001b[0;31m \u001b[0my_pred\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mmodel\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mx\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 15\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 16\u001b[0m \u001b[0mloss\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mcriterion\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0my_pred\u001b[0m\u001b[0;34m,\u001b[0m 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