IRT estimation with pymc3

add a notebook to try MatFact, ColabFilt, and RecSym

a basic cirq setup

Update 20200116_efo_analysis.py

mdoel3

implement model2 in pymc3, and add initial model3 impl (model3 is still WIP)

new csript for efo analysis and refact tidy efo

add plots to titdy efo script

script to make EFO dataset tidy!

a new notebook to generate tidy datasets from EFO kickoff datasets

import efo/pubmed script

query all rdfs:labels for efo, and generate a csv with pubmed results

script to fetch publications for tasks and concepts of cognitive atlas

improve pubmed codes and refactor it as a function

script to fetch virtually unlimited abstracts without NCBI limitations

remove temp and junk files

improve KL divergence docs and cleanups

update pandas notebook

add n-back analysis outline, and a new ICOM poisson generator using arrival time instead of counts

improve poisson encoder and visualize a sample output

a webapp to generate attentional blink sequences

Folk2002 sequence generator for attentional blink

new encoder for poisson rate coding.

make the spike train visualizer an app

a simple spike train visualizer

visualize trace and posterior of stan model

possion generators and brian2 playground

add PyStan sample codes to model a linear regression

learning poisson, exp, and gamma and playing with it

KL divergence, exp, and poi tests