History for notebooks / efo / fetch_efo_ontology_from_pubmed.py
2020-01-14
update efo scripts and add a new cleanup script
Morteza Ansarinia committed on 14 Jan 2020
2020-01-13
import efo/pubmed script
Morteza Ansarinia committed on 13 Jan 2020
2020-01-12
fix how headers is made for imcomplete data file
Morteza Ansarinia committed on 12 Jan 2020
comment
Morteza Ansarinia committed on 12 Jan 2020
cleanup
Morteza Ansarinia committed on 12 Jan 2020
add new pubmed csv generator (v2) that supports several queries
Morteza Ansarinia committed on 12 Jan 2020
a query builder and a smart code to fetch only unfetched queries from pubmed
Morteza Ansarinia committed on 12 Jan 2020
query all rdfs:labels for efo, and generate a csv with pubmed results
Morteza Ansarinia committed on 12 Jan 2020
2020-01-09
a new script to query concepts and tasks from EFO ontology and then count pubmed papers for the combinations
Morteza Ansarinia committed on 9 Jan 2020