GitBucket
| 2021-03-06 |
notes
Morteza Ansarinia
committed
on 6 Mar 2021
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| 2021-02-22 |
move topic_modeling to the efo folder
Morteza Ansarinia
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on 22 Feb 2021
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| 2021-02-16 |
reorganize notebooks
Morteza Ansarinia
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on 16 Feb 2021
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| 2020-01-16 |
move efo notebooks to its own project
Morteza Ansarinia
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on 16 Jan 2020
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| 2020-01-15 |
fix efo file naming and cleanups
Morteza Ansarinia
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on 15 Jan 2020
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preproessed dataset
Morteza Ansarinia
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on 15 Jan 2020
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fix file name
Morteza Ansarinia
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on 15 Jan 2020
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fix file names
Morteza Ansarinia
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on 15 Jan 2020
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rename efo datasets and add a date tag
Morteza Ansarinia
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on 15 Jan 2020
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finally! PubMed dataset v2 is ready!
Morteza Ansarinia
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on 15 Jan 2020
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| 2020-01-14 |
added a function to cleanup columns for suffixed hits
Morteza Ansarinia
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on 14 Jan 2020
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update efo scripts and add a new cleanup script
Morteza Ansarinia
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on 14 Jan 2020
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| 2020-01-13 |
import efo/pubmed script
Morteza Ansarinia
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on 13 Jan 2020
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| 2020-01-12 |
fix how headers is made for imcomplete data file
Morteza Ansarinia
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on 12 Jan 2020
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comment
Morteza Ansarinia
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on 12 Jan 2020
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add efo ontology v1 in owl format
Morteza Ansarinia
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on 12 Jan 2020
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cleanup
Morteza Ansarinia
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on 12 Jan 2020
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add new pubmed csv generator (v2) that supports several queries
Morteza Ansarinia
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on 12 Jan 2020
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a query builder and a smart code to fetch only unfetched queries from pubmed
Morteza Ansarinia
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on 12 Jan 2020
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query all rdfs:labels for efo, and generate a csv with pubmed results
Morteza Ansarinia
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on 12 Jan 2020
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| 2020-01-09 |
a new script to query concepts and tasks from EFO ontology and then count pubmed papers for the combinations
Morteza Ansarinia
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on 9 Jan 2020
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